Framework Invalid

I have a system that I"m fairly certain has been compromised. I’m trying to clean it out using the validate command but since the framework is invalid the command won’t run. When I attempt to refreshsignatures I see the following error. (see below) Is there any way to get around this and validate framework?

Checking framework...
    Signature Invalid
            Refreshing framework
    Starting module download from ...
     10512213/10512213 [============================] 100%
    Finished downloading
    Extracting...The following error(s) occured:
     - File Integrity failed for /var/www/html/admin/modules/_cache/framework- - aborting (Cause: GPG took too long to run the command: [/usr/bin/gpg2 --homedir /home/asterisk/.gnupg --no-permission-warning --keyserver-options auto-key-retrieve=true,timeout=10 --no-tty --status-fd 3 --verify '/var/www/html/admin/modules/_cache/framework-'])

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