Phone Clicking / Totals Calls Show More the Actual Active Calls

On my system i have users reporting a clicking sound while on calls, sometimes its so bad they cannot hear the other party. Ive tried messing with the CODECs and Jitter buffer to no avail. I have also tried switching the switch the system is connected to. Also my Total calls showing on the system status page do not match actual active calls, even as i post this is what i see:

FreePBX Statistics
Total active calls - 4
Internal calls - 2
External calls - 0
Total active channels - 7

FreePBX Connections
IP Phones Online - 43

Here are my system details. The server is standalone and it is a new Lenovo server with nice hardware.

PIAF Installed Version = 2.0.6.2 Running on HARDWARE FreePBX Version = 2.8.1.4 Running Asterisk Version = 1.8.8.0 Asterisk Source Version = 1.8.8.0 Dahdi Source Version = 2.6.0+2.6.0 Libpri Source Version = 1.4.12
IP Address = xx.xx.xx.xx eth0
Operating System = CentOS release 6.2 (Final)
Kernel Version = 2.6.32-220.2.1.el6.x86_64 - 64 Bit
Gig network

Processor
Load Average 0.00
CPU 0%

Memory
App Memory 17%
Swap 0%

Please let me know if you need more info. My main two concerns are the clicking while on a call and more channels open then actual active calls.

When running sip show channels while have more channels open then actual calls i get

Peer User/ANR Call ID Format Hold Last Message Expiry Peer
10.0.xx.xxx (None) 7239332c-xxxxxx 0x0 (nothing) No Rx: SUBSCRIBE
10.0.xx.xxx 438 47eb8afc094xxxx 0x4 (ulaw) No Tx: ACK 438
10.0.xx.xx (None) 31be6851-xxxxxx 0x0 (nothing) No Rx: REGISTER
10.0.xx.xxx 440 6d6066a93xxxxxx 0x4 (ulaw) No Init: INVITE 440
10.0.xx.xx 445 47be439a1xxxxxx 0x4 (ulaw) No Tx: ACK 445
10.0.xx.xx 430 4aa210414xxxxxx 0x4 (ulaw) No Init: INVITE 430
10.0.xx.xx 424 2f5f86273xxxxxx 0x4 (ulaw) No Tx: ACK 424
7 active SIP dialogs

With the system status showing 2 calls that are not actual calls:

FreePBX Statistics
Total active calls 4
Internal calls 2
External calls 0
Total active channels 7

Random question, anyone been able to use the listen in feature to listen on active calls? I have it and it calls my phone, but i do not hear the call.