Issue with a damaged upgrade

Running Asterisk 11.21.2
FW Console - FreePBX Utility version 13.0.81

Three issues haunt this install.

  1. Unable to Load Extensions in the FreePBX web GUI, comes up with a PHP error.
  2. Have to force “Force Asterisk Version” to allow Reload
  3. Had to do manual edits to handle issue of:
    pbx.c:4926 pbx_extension_helper: No application ‘VQA’ for extension (from-trunk,
    on reload

Looking for a ideas on where to try and resolve what broke and how I broke it

When opening Applications - Extensions, get the error

ErrorException
Undefined index: data
File: /var/www/html/admin/libraries/php-asmanager.php:1397

Got this resolved. Turned out to be an issue with the same [admin] section being in the manager.conf file twice. All the info was the same, but was causing it not to work properly.